Hello, after resetting the settings in FPSE advanced system options, I set a bunch of settings in video and gamepad, both regular and advanced, then I saved them as default. However whenever I start a game, the most of the settings are as the original reset, and choosing Apply default settings doesn't change anything. I end up going through all the settings manually.
It's a minor issue for me personally, I just want to note it for you. All the best!